PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 320aa    MW: 35408.2 Da    PI: 6.8783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09233276755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Sopen02g036060.1 233 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAIGYVKFLQ 276
                       5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11227283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-10228280No hitNo description
SuperFamilySSF474593.01E-13228286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-11232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6234276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSMALAKEHV IMSDTKMGMV DNYDQYYEGE FGIHDHSSPE LYGIHEEPPK SIFEECENSE  60
KTSPKIAKNF ALSSSNSSLS SPSSSNSNAQ SVINFKGAYG NFMHSANGSL LSFEQSERFC  120
PNPRMISNIN QVEGSVWEDN NLHYQNCVTP KGSSNTSPRV INDNSNNNGI PFGWLNSEAN  180
ASTTTHVDES RFNKRPSTEE SMQTNKKQCS AGSKKGKPNN NNNSIGTKDP QSIAAKNRRE  240
RISERLKILQ ELVPNGSKVD LVTMLEKAIG YVKFLQLQVK VLATDEFWPT QGGKAPDISQ  300
VKEAIDAILA TQRDRNSTSK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065395.10.0PREDICTED: transcription factor bHLH83
SwissprotQ9C7075e-58BH083_ARATH; Transcription factor bHLH83
TrEMBLM1D0P90.0M1D0P9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000787760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.17e-59ROOT HAIR DEFECTIVE6